Jupyter 镜像详情
JupyterHub 提供了多个预制镜像，方便用户使用。
CPU 镜像
R 基础环境
- 镜像名：
reg.epti.moe/epti-jupyter/r-notebook:latest - 系统：22.04.3 LTS (Jammy Jellyfish)
- 预装系统软件：curl, wget, rsync, git, nano, zip, unzip, unrar, vim, htop, exa, duf, bat, texlive
- Python 版本号：3.10.12
- 预装 Python 包：参见默认 Python 包列表
- R 版本号：4.3.1
- 预装 R 包：参见默认 R 包列表
- Tensorboard & Code-server: 已预装
- 镜像名：
R 生信环境
- 镜像名：
reg.epti.moe/epti-jupyter/bioinfor-notebook:latest - 系统：22.04.3 LTS (Jammy Jellyfish)
- 预装系统软件：curl, wget, rsync, git, nano, zip, unzip, unrar, vim, htop, exa, duf, bat, texlive
- Python 版本号：3.10.12
- 预装 Python 包：参见默认 Python 包列表
- R 版本号：4.3.1
- 预装 R 包：参见生信 R 包列表
- Tensorboard & Code-server: 已预装
- 镜像名：
Python 基础环境
- 镜像名：
reg.epti.moe/epti-jupyter/minimal-notebook:latest - 系统：22.04.3 LTS (Jammy Jellyfish)
- 预装系统软件：curl, wget, rsync, git, nano, zip, unzip, unrar, vim, htop, exa, duf, bat, texlive
- Python 版本号：3.10.12
- 预装 Python 包：
- Tensorboard & Code-server: 未预装
- 镜像名：
Python 数据科学
- 镜像名：
reg.epti.moe/epti-jupyter/data-notebook:latest - 系统：22.04.3 LTS (Jammy Jellyfish)
- 预装系统软件：curl, wget, rsync, git, nano, zip, unzip, unrar, vim, htop, exa, duf, bat, texlive
- Python 版本号：3.10.12
- 预装 Python 包
- 参见默认 Python 包列表
- altair
- beautifulsoup4
- bokeh
- bottleneck
- cloudpickle
- conda-forge::blas=*=openblas
- cython
- dask
- dill
- h5py
- ipympl
- ipywidgets
- jupyterlab-git
- matplotlib-base
- numba
- numexpr
- openpyxl
- pandas
- patsy
- protobuf
- pytables
- scikit-image
- scikit-learn
- scipy
- seaborn
- sqlalchemy
- statsmodels
- sympy
- widgetsnbextension
- xlrd
- Tensorboard & Code-server: 已预装
- 镜像名：
Python 生信环境
镜像名：
reg.epti.moe/epti-jupyter/bioinfo-notebook:latest系统：22.04.3 LTS (Jammy Jellyfish)
预装系统软件：curl, wget, rsync, git, nano, zip, unzip, unrar, vim, htop, exa, duf, bat, texlive
Python 版本号：3.10.12
预装 Python 包
- 参见默认 Python 包列表
- openblas
- cython
- h5py
- ipympl
- ipywidgets
- jupyterlab-git
- matplotlib-base
- widgetsnbextension
- numpy
- pandas
- scikit-image
- scikit-learn
- scikit-network
- scipy
- seaborn
- biopython
- scanpy
- umap-learn
- anndata
- python-igraph
- python-louvain
Tensorboard & Code-server: 已预装
GPU 镜像
目前只有 Python 的 GPU 镜像，都在 默认 Python 包列表 基础上安装更多的包并配置 CUDA 机器学习环境。
CUDA12 PyTorch 医疗影像环境
- 镜像名：
reg.epti.moe/epti-jupyter/pytorch-gpu-notebook-cuda121:latest - 系统：22.04.3 LTS (Jammy Jellyfish)
- 预装系统软件：curl, wget, rsync, git, nano, zip, unzip, unrar, vim, htop, exa, duf, bat, texlive
- CUDA: 12.1
- Python 版本号：3.11
- 机器学习库：PyTorch 2.1
- 预装 Python 包
- pandas
- scikit-learn
- scipy
- matplotlib
- seaborn
- monai
- nibabel
- tensorboardX
- ipywidgets
- pandas-profiling
- Tensorboard & Code-server: 已预装
- 镜像名：
CUDA11 PyTorch 医疗影像环境
- 镜像名：
reg.epti.moe/epti-jupyter/pytorch-gpu-notebook-cuda118:latest - 系统：22.04.3 LTS (Jammy Jellyfish)
- 预装系统软件：curl, wget, rsync, git, nano, zip, unzip, unrar, vim, htop, exa, duf, bat, texlive
- CUDA: 11.8
- Python 版本号：3.11
- 机器学习库：PyTorch 2.1
- 预装 Python 包
- pandas
- scikit-learn
- scipy
- matplotlib
- seaborn
- monai
- nibabel
- tensorboardX
- ipywidgets
- pandas-profiling
- Tensorboard & Code-server: 已预装
- 镜像名：
CUDA11 TensorFlow 医疗影像环境
- 镜像名：
reg.epti.moe/epti-jupyter/pytorch-gpu-notebook-cuda121:latest - 系统：22.04.3 LTS (Jammy Jellyfish)
- 预装系统软件：curl, wget, rsync, git, nano, zip, unzip, unrar, vim, htop, exa, duf, bat, texlive
- CUDA: 11.8
- Python 版本号：3.11
- 机器学习库：TenorFlow 2.13
- 预装 Python 包
- pandas
- scikit-learn
- scipy
- matplotlib
- seaborn
- monai
- nibabel
- tensorboardX
- ipywidgets
- pandas-profiling
- Tensorboard & Code-server: 已预装
- 镜像名：
[Legacy] CUDA11 PyTorch 医疗影像环境
- 镜像名：
reg.epti.moe/library/jupyter_lab_singleuser_gpu:latest - 系统：22.04 LTS (Jammy Jellyfish)
- 预装系统软件：wget, git, nano, zip, unzip, unrar, vim
- CUDA: 11.7
- Python 版本号：3.10
- 机器学习库：PyTorch 2.0
- 预装 Python 包
- pandas
- scikit-learn
- scipy
- matplotlib
- seaborn
- monai
- nibabel
- tensorboardX
- ipywidgets
- pandas-profiling
- Tensorboard & Code-server: 已预装
- 镜像名：
[Legacy] CUDA11 TensorFlow 医疗影像环境
- 镜像名：
reg.epti.moe/library/jupyter_lab_tensorflow_gpu:latest - 系统：22.04 LTS (Jammy Jellyfish)
- 预装系统软件：wget, git, nano, zip, unzip, unrar, vim
- CUDA: 11.7
- Python 版本号：3.10
- 机器学习库：TenorFlow 2.10
- 预装 Python 包
- pandas
- scikit-learn
- scipy
- matplotlib
- seaborn
- monai
- nibabel
- ipywidgets
- pandas-profiling
- Tensorboard & Code-server: 未预装
- 镜像名：
默认 Python 包列表
Package Version
----------------------------- ------------
aiofiles 22.1.0
aiohttp 3.8.6
aiosignal 1.3.1
aiosqlite 0.19.0
alembic 1.12.0
anyio 4.0.0
argon2-cffi 23.1.0
argon2-cffi-bindings 21.2.0
arrow 1.3.0
asttokens 2.4.0
async-generator 1.10
async-lru 2.0.4
async-timeout 4.0.3
attrs 23.1.0
Babel 2.13.0
backcall 0.2.0
backports.functools-lru-cache 1.6.5
beautifulsoup4 4.12.2
bleach 6.1.0
blinker 1.6.3
boltons 23.0.0
Brotli 1.1.0
cached-property 1.5.2
certifi 2023.7.22
certipy 0.1.3
cffi 1.16.0
charset-normalizer 3.3.0
colorama 0.4.6
comm 0.1.4
conda 23.9.0
conda-package-handling 2.2.0
conda_package_streaming 0.9.0
cryptography 41.0.4
debugpy 1.8.0
decorator 5.1.1
defusedxml 0.7.1
entrypoints 0.4
exceptiongroup 1.1.3
executing 1.2.0
fastjsonschema 2.18.1
fqdn 1.5.1
frozenlist 1.4.0
greenlet 3.0.0
idna 3.4
importlib-metadata 6.8.0
importlib-resources 6.1.0
ipykernel 6.25.2
ipython 8.16.1
ipython-genutils 0.2.0
isoduration 20.11.0
jedi 0.19.1
Jinja2 3.1.2
json5 0.9.14
jsonpatch 1.33
jsonpointer 2.4
jsonschema 4.19.1
jsonschema-specifications 2023.7.1
jupyter_client 7.4.9
jupyter_core 5.4.0
jupyter-events 0.8.0
jupyter-lsp 2.2.0
jupyter-resource-usage 0.7.2
jupyter_server 2.8.0
jupyter_server_fileid 0.9.0
jupyter_server_proxy 4.1.0
jupyter_server_terminals 0.4.4
jupyter_server_ydoc 0.8.0
jupyter-telemetry 0.1.0
jupyter-vscode-proxy 0.2
jupyter-ydoc 0.2.5
jupyterhub 4.0.2
jupyterlab 3.6.6
jupyterlab-pygments 0.2.2
jupyterlab_server 2.25.0
jupyterlab-system-monitor 0.8.0
jupyterlab-topbar 0.6.1
libmambapy 1.5.2
Mako 1.2.4
mamba 1.5.2
MarkupSafe 2.1.3
matplotlib-inline 0.1.6
mistune 3.0.1
multidict 6.0.4
nbclassic 1.0.0
nbclient 0.8.0
nbconvert 7.9.2
nbformat 5.9.2
nest-asyncio 1.5.8
notebook 6.5.6
notebook_shim 0.2.3
oauthlib 3.2.2
overrides 7.4.0
packaging 23.2
pamela 1.1.0
pandocfilters 1.5.0
parso 0.8.3
pexpect 4.8.0
pickleshare 0.7.5
pip 23.3
pkgutil_resolve_name 1.3.10
platformdirs 3.11.0
pluggy 1.3.0
prometheus-client 0.17.1
prompt-toolkit 3.0.39
psutil 5.9.5
ptyprocess 0.7.0
pure-eval 0.2.2
pycosat 0.6.6
pycparser 2.21
pycurl 7.45.1
Pygments 2.16.1
PyJWT 2.8.0
pyOpenSSL 23.2.0
PySocks 1.7.1
python-dateutil 2.8.2
python-json-logger 2.0.7
pytz 2023.3.post1
PyYAML 6.0.1
pyzmq 24.0.1
referencing 0.30.2
requests 2.31.0
rfc3339-validator 0.1.4
rfc3986-validator 0.1.1
rpds-py 0.10.6
ruamel.yaml 0.17.39
ruamel.yaml.clib 0.2.7
Send2Trash 1.8.2
setuptools 68.2.2
simpervisor 1.0.0
six 1.16.0
sniffio 1.3.0
soupsieve 2.5
SQLAlchemy 2.0.22
stack-data 0.6.2
terminado 0.17.1
tinycss2 1.2.1
tomli 2.0.1
tornado 6.3.3
tqdm 4.66.1
traitlets 5.11.2
truststore 0.8.0
types-python-dateutil 2.8.19.14
typing_extensions 4.8.0
typing-utils 0.1.0
uri-template 1.3.0
urllib3 2.0.7
wcwidth 0.2.8
webcolors 1.13
webencodings 0.5.1
websocket-client 1.6.4
wheel 0.41.2
y-py 0.6.2
yarl 1.9.2
ypy-websocket 0.8.4
zipp 3.17.0
zstandard 0.21.0
默认 R 包列表
r-base
r-caret
r-crayon
r-devtools
r-e1071
r-forecast
r-hexbin
r-htmltools
r-htmlwidgets
r-irkernel
r-nycflights13
r-randomforest
r-rcurl
r-rmarkdown
r-rodbc
r-rsqlite
r-shiny
r-tidymodels
r-tidyverse
生信 R 包列表
r-base
r-caret
r-crayon
r-devtools
r-e1071
r-forecast
r-hexbin
r-htmltools
r-htmlwidgets
r-irkernel
r-nycflights13
r-randomforest
r-rcurl
r-rmarkdown
r-rodbc
r-rsqlite
r-shiny
r-tidymodels
r-tidyverse
r-abind
r-acepack
r-askpass
r-assertthat
r-backports
r-base64enc
r-bh
r-bit
r-bit64
r-bitops
r-blob
r-boot
r-brio
r-bslib
r-cachem
r-callr
r-catools
r-checkmate
r-class
r-classint
r-cli
r-cluster
r-coda
r-codetools
r-colorspace
r-commonmark
r-cowplot
r-cpp11
r-crosstalk
r-curl
r-data.table
r-dbi
r-dbscan
r-deldir
r-deoptimr
r-desc
r-diffobj
r-digest
r-doparallel
r-dplyr
r-dqrng
r-dynamictreecut
r-ellipsis
r-evaluate
r-expm
r-fansi
r-farver
r-fastcluster
r-fastmap
r-fit.models
r-fitdistrplus
r-fnn
r-foreach
r-foreign
r-formatr
r-formula
r-fs
r-furrr
r-futile.logger
r-futile.options
r-future
r-future.apply
r-gdata
r-generics
r-ggplot2
r-ggrepel
r-ggridges
r-globals
r-glue
r-gmodels
r-goftest
r-gplots
r-gridextra
r-grr
r-gtable
r-gtools
r-highr
r-hmisc
r-htmltable
r-httpuv
r-httr
r-hunspell
r-ica
r-igraph
r-irlba
r-isoband
r-iterators
r-jpeg
r-jquerylib
r-jsonlite
r-kernsmooth
r-knitr
r-labeling
r-lambda.r
r-later
r-lattice
r-latticeextra
r-lazyeval
r-learnbayes
r-leiden
r-leidenbase
r-lifecycle
r-listenv
r-lmtest
r-lsei
r-magrittr
r-markdown
r-mass
r-matrix
r-matrix.utils
r-matrixstats
r-memoise
r-mgcv
r-mime
r-miniui
r-modeldata
r-monocle3
r-munsell
r-mvtnorm
r-nlme
r-nnet
r-npsurv
r-openssl
r-parallelly
r-patchwork
r-pbapply
r-pbmcapply
r-pcapp
r-pheatmap
r-pillar
r-pkgconfig
r-pkgload
r-plogr
r-plotly
r-plyr
r-png
r-polyclip
r-praise
r-processx
r-promises
r-proxy
r-pryr
r-ps
r-pscl
r-purrr
r-r6
r-rann
r-rappdirs
r-raster
r-rcolorbrewer
r-rcpp
r-rcppannoy
r-rcpparmadillo
r-rcppeigen
r-rcpphnsw
r-rcppparallel
r-rcppprogress
r-rcpptoml
r-recommended
r-rematch2
r-reshape2
r-reticulate
r-rhpcblasctl
r-rlang
r-robust
r-robustbase
r-rocr
r-rpart
r-rprojroot
r-rrcov
r-rsample
r-rspectra
r-rstudioapi
r-rsvd
r-rtsne
r-s2
r-sass
r-scales
r-scattermore
r-sctransform
r-seurat
r-seuratobject
r-sf
r-sitmo
r-slam
r-slider
r-snow
r-sourcetools
r-sp
r-spatial
r-spatstat
r-spatstat.core
r-spatstat.data
r-spatstat.geom
r-spatstat.linnet
r-spatstat.random
r-spatstat.sparse
r-spatstat.utils
r-spdata
r-spdep
r-speedglm
r-spelling
r-stringi
r-stringr
r-survival
r-sys
r-tensor
r-testthat
r-tibble
r-tidyr
r-tidyselect
r-tinytex
r-units
r-utf8
r-uwot
r-vctrs
r-viridis
r-viridislite
r-waldo
r-warp
r-wgcna
r-withr
r-wk
r-xfun
r-xml2
r-xtable
r-yaml
r-zoo